WebChemistry Services and Apps

3D Molecular Visualization

---

• LiteMol
  A powerful 3D molecular viewer

3D Molecular Data Identification and Analysis

---

• PatternQuery
  Find atom patterns in molecular databases
• CoordinateServer
  Streaming of 3D molecular data
• DensityServer
  Streaming of 3D experimental data (e.g., X-ray or CryoEM)
• AtomicChargeCalculator II
  Conformationally dependent atomic charges of quantum mechanics quality

3D Molecular Data Validation

---

• MotiveValidator
  Validate residues, ligands, and molecular fragments
• Validator^DB
  Ligands in PDB database, validated using MotiveValidator
• ValTrends^DB
  Discover trends in structure quality

Channel Computation

---

• MOLE 2.5
  Compute and analyze channels

Local Sequence Alignment

---

• CrocoBLAST
  Optimized parallel implementation of local sequence alignment algorithms