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ValidatorDB:Database organization

20 bytes removed, 13:26, 3 September 2014
Synopsis page
'''ValidatorDB''' is organized on two main levels, namely PDB-wide validation statistics (synopsis page), and detailed validation reports for specific molecules of interest (specifics page). We shall describe each level of the database in detail below.
===Synopsis page===
The '''ValidatorDB''' synopsis page contains a brief description of '''ValidatorDB''', along with information about the last database update (date and number of structures that have been processed during the validation). Specifically, in May 2014, over 100,000 PDB entries had been processed, containing over 230,000 molecules relevant for validation, and approximately 17,000 different models were used as reference during validation.
Additionally, the ''synopsis page'' allows to access the validation results for specific residues of interest via the '''Quick Lookup bar''' at the bottom of the page. Simply type a comma separated list of residue annotations (3-letter codes) into the '''Quick Lookup bar''', and you will be redirected to the [[ValidatorDB:Database_organization#Specifics_page | specifics page]] containing validation results for the molecules you requested. If you specify a list of PDB IDs (4-letter codes) instead, then the corresponding [[ValidatorDB:Database_organization#Specifics_page | specifics page]] will contain validation results for all relevant molecules in the PDB entries you specified.
====Overview====
[[File:VDB_overview.png|thumb|right|500px|The ''synopsis page'' consists of 6 tabs, two providing support, and four enabling access to the database itself. The support tabs '''Quick Help''' and '''Samples''' help you get started, with basic information and examples of database snippets. Various interactive guides are accessible by a green button at the top right corner of some tabs.]]
Note that this table can be downloaded in a *.csv format after clicking 'CSV' in the bottom right corner of the infographics.
====Details by molecule====
[[File:VDB_Residues.PNG|thumb|right|500px|The ''synopsis page'' consists of 6 tabs, two providing support, and four enabling access to the database itself. The support tabs '''Quick Help''' and '''Samples''' help you get started, with basic information and examples of database snippets. Various interactive guides are accessible by a green button at the top right corner of some tabs.]]
====Details by PDB entry====
[[File:VDB_PDBEntries.PNG|thumb|right|500px|The ''synopsis page'' consists of 6 tabs, two providing support, and four enabling access to the database itself. The support tabs '''Quick Help''' and '''Samples''' help you get started, with basic information and examples of database snippets. Various interactive guides are accessible by a green button at the top right corner of some tabs.]]
====Custom search====
[[File:VDB_Custom.PNG|thumb|right|500px|The ''synopsis page'' consists of 6 tabs, two providing support, and four enabling access to the database itself. The support tabs '''Quick Help''' and '''Samples''' help you get started, with basic information and examples of database snippets. Various interactive guides are accessible by a green button at the top right corner of some tabs.]]

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