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ValidatorDB:Database organization

551 bytes added, 11:00, 8 September 2014
Summary
==Summary==
[[File:VDB_Residue_summary.PNG|thumb|right|650px|The validation reports available in the '''Summary''' tab of the ''specifics page'' allows easy navigation between are organized by annotation(3-based validation letter code). You can easily navigate between reportsby clicking on the annotation of interest in the bar under the tab names. Each report consists of a description of information about the model and validated molecules corresponding to that particular annotation, a recapitulation of all validated molecules sharing that annotation, statistics for each validation analysis (completeness, chirality, advanced), and statistics for each problematic atom.]]
{| class="wikitable" border="1" |- |<!--Col1--><center>[[File:VDB_Residue_summary.PNG| 500px]] |<!--Col2-->[[File:VDB_Entry_summary.PNG| 500px]] |- |<!--Col1-->The validation reports available in the '''Summary''' tab of the ''specifics page'' are organized by for all molecules sharing a '''specific annotation (3-letter code)'''. You can easily navigate between reports by clicking on The report consists of a description of the model corresponding to that annotation , a recapitulation of all validated molecules sharing that annotation, statistics for each validation analysis (completeness, chirality, advanced), and statistics for each problematic atom. |<!--Col2--> The '''Summary''' tab of interest in the bar under the tab names''specifics page'' for a '''single PDB entry''' allows easy navigation between annotation-based validation reports. Each report consists of information about a description of the model and corresponding to that annotation, a recapitulation of all validated molecules corresponding to sharing that particular annotation, statistics for each validation analysis (completeness, chirality, advanced), and statistics for each problematic atom. |}
First, the model from wwPDB CCD is briefly described by name, molecular formula, 2D structure, etc. Next, a recapitulation of all molecules and their respective PDB entries is also included, followed by a table with results of the main validation analyses (completeness, chirality, advanced). For each validation analysis, statistics are provided for all problematic atoms. Note that here the statistics cover only the molecules sharing this annotation (3-letter code).

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