LiteMol:Use Cases

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_NOTOC__

This page shows instructions for the most typical and useful operations that LiteMol can perform.




Basics

Introduction to LiteMol environment, loading a molecular structure, using basic controls and settings, mouse tricks, interactive usage.


Visual Representations

How to create and update visual representations of molecules, different types of representations and their parameters.


Visualization of Electron Density Maps

How to load electron density data and visualize density isosurfaces.


Biological Assemblies And Crystal Symmetry

Reconstructing biological assemblies from an asymmetric unit, using crystal symmetry operations to reconstruct neighbors in the crystal lattice.


Visualizing PDBe Sequence Annotations And Validation Reports

How to load sequence annotations from PDBe and use distinctive coloring for the annotated parts of biomolecule structure. How to visualize structure quality using PDBe validation data.


Using Selections

How to use selection algebra to retrieve particular regions of a structure, such as specific residues, atoms, or chains.