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LiteMol is a web tool for visualization of molecular structures, particularly macromolecules. It is designed to be user-friendly yet flexible, interactive, and very fast even for extremely large protein structures. LiteMol can be run directly from your web browser.

Apart from the standard functionality expected of visualization tools, LiteMol can visualize electron densities and cryo-EM maps from which the models are derived. It can also display validation and annotation data from several databases on the model.

This user manual provides the necessary information about LiteMol's functionality and the instructions for its use. It also shows the most typical use cases with step-by-step instructions. Additional hints are available in LiteMol itself when hovering above the i icons.

LiteMol is available from the following address:


Hierarchy of Entities

  1. Structures
  2. Visualization
  3. Annotations
  4. Raw Data


  1. Features
  2. Advanced

Selection Algebra

  1. Basic
  2. Advanced
  3. Logical

Use Cases

Embedding in Your Web

Integration with other services