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SecStrAnnotator Suite provides scripts (Python, R
, and bash) for batch annotation of the whole family and analysis of the annotation results.
* formatting into [[SecStrAnnotator:SecStrAPI#SecStrAPI_format | SecStrAPI format]],
* formatting into TSV format for further analyses.
Before running, modify the
SETTINGS section of <code> SecStrAPI_master. sh</code> to set your family of interest, data directory , options, paths to your template annotation ( TEMPLATE_ANNOTATION_FILE, TEMPLATE_STRUCTURE_FILE) . Unwanted steps of the pipeline can be commented out in the MAIN PIPELINE section.
For the Cytochrome P450 family, structures of
1775 protein domains are available, located in 953 PDB entries (updated on 23 March 2020). The analysis was performed on a non-redundant subset containing 175 protein domains.
The data are available [https://
is. muni. cz/www/midlik/secstrannotator/ CytochromesP450-20200323-without_structures. zip here] (structural files not included because of their size).
===Occurrence of SSEs===