ValidatorDB:UserManual

From WebChem Wiki
Revision as of 04:41, 3 September 2014 by Crina (talk | contribs) (Created page with "__NOTOC__ '''ValidatorDB''' is a database of precomputed validation results for all ligands and non-standard residues in the Protein Data Bank (PDB). The molecules deemed rel...")

(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search


ValidatorDB is a database of precomputed validation results for all ligands and non-standard residues in the Protein Data Bank (PDB). The molecules deemed relevant for validation are all ligands and non-standard residues with 7 or more heavy atoms. Standard nucleotides, standard amino acids and selenomethionine are not covered. The models from the wwPDB Chemical Component Dictionary (wwPDB CCD) are used as reference structures during validation. The database is updated on a weekly basis.

Below you can find all the information you need in order to make efficient use of ValidatorDB.

Introduction to ValidatorDB

If you are a first time user, we recommend that you go through the basic presentation specifically prepared to help you get oriented.


Terminology

Definitions of terms used in ValidatorDB

Principles

Ddescriptions of principles used in ValidatorDB


Synopsis Page

PDB-wide statistics and custom validation reports

Specifics Page

Detailed validation reports for specific sections of the database


Case Studies

Examples of interesting database snippets

UI Description

Organization of the user interface